Protein structure prediction

Results: 247



#Item
201Protein methods / Computational phylogenetics / Structural alignment / Sequence alignment / Root-mean-square deviation / BLAST / Protein family / Protein structure prediction / STING / Bioinformatics / Science / Biology

16 STRUCTURE COMPARISON AND ALIGNMENT Marc A. Marti-Renom, Emidio Capriotti, Ilya N. Shindyalov, and Philip E. Bourne

Add to Reading List

Source URL: www.sdsc.edu

Language: English - Date: 2009-05-21 13:20:04
202Molecular modelling / Science / Protein structure / Protein methods / Molecular dynamics / Protein structure prediction / Force field / CASP / Macroeconomic model / Chemistry / Bioinformatics / Computational chemistry

proteins STRUCTURE O FUNCTION O BIOINFORMATICS A novel method for predicting and using distance constraints of high accuracy for refining protein structure prediction

Add to Reading List

Source URL: www.ram.org

Language: English - Date: 2010-03-21 03:29:28
203Science / Protein structure / Molecular biology / Molecular modelling / Protein methods / Root-mean-square deviation / Protein structure prediction / Docking / Interactome / Bioinformatics / Biology / Chemistry

proteins STRUCTURE O FUNCTION O BIOINFORMATICS A generalized knowledge-based discriminatory function for biomolecular interactions Brady Bernard1 and Ram Samudrala2*

Add to Reading List

Source URL: www.ram.org

Language: English - Date: 2010-03-15 03:02:51
204Computational phylogenetics / Chemistry / Protein structure / Protein methods / Protein domains / Sequence alignment / Multiple sequence alignment / Conserved sequence / Structural alignment / Bioinformatics / Biology / Science

26 PREDICTION OF PROTEIN–PROTEIN INTERACTIONS FROM EVOLUTIONARY INFORMATION Alfonso Valencia and Florencio Pazos

Add to Reading List

Source URL: www.sdsc.edu

Language: English - Date: 2010-11-13 17:17:00
205Protein methods / Chemistry / Protein structure / Helices / Computational chemistry / Root-mean-square deviation / Protein structure prediction / Alpha helix / CASP / Bioinformatics / Statistics / Biology

Ab initio protein structure prediction results using a simple distance geometry-based method Enoch Huang1 Ram Samudrala2 and Jay Ponder1 1 Department of Biochemistry and Molecular Biophysics

Add to Reading List

Source URL: www.ram.org

Language: English - Date: 2005-12-27 20:34:08
206Bioinformatics / Computational chemistry / Molecular modelling / Vision / Docking / Receptor / Opsin / Protein structure prediction / Retinal / Biology / Chemistry / Protein structure

PROTEINS: Structure, Function, and Bioinformatics 61:412– [removed]Structural Insights Into the Cellular Retinaldehyde-Binding Protein (CRALBP) Tianyun Liu,1 Ekachai Jenwitheesuk,2 David C. Teller,1* and Ram Samudra

Add to Reading List

Source URL: www.ram.org

Language: English - Date: 2005-12-27 20:41:11
207Computational science / Threading / CASP / Protein structure prediction / Structural genomics / Multiple sequence alignment / Sequence alignment / Protein domain / Protein structure / Bioinformatics / Science / Biology

Published: 14 September 2009 © 2009 Biology Reports Ltd Diversity of protein structures and difficulties in fold recognition: the curious case of protein G Jeremy Horst1,2 and Ram Samudrala1,2*

Add to Reading List

Source URL: www.ram.org

Language: English - Date: 2010-03-17 01:27:57
208Protein structure / Protein methods / Science / Statistics / Structural alignment / Homology modeling / Sequence alignment / Beta sheet / Root-mean-square deviation / Bioinformatics / Biology / Computational phylogenetics

PROTEINS: Structure, Function, and Genetics, Suppl. 1:43–[removed]Handling Context-Sensitivity in Protein Structures Using Graph Theory: Bona Fide Prediction Ram Samudrala1,2 and John Moult1* 1Center for Advanced Res

Add to Reading List

Source URL: www.ram.org

Language: English - Date: 2005-12-27 20:33:09
209Science / Protein structure / Biology / CASP / Protein structure prediction / Homology modeling / Structural alignment / Threading / De novo protein structure prediction / Bioinformatics / Protein methods / Chemistry

3296–3299 Nucleic Acids Research, 2003, Vol. 31, No. 13 DOI: [removed]nar/gkg541 PROTINFO: secondary and tertiary protein structure prediction

Add to Reading List

Source URL: www.ram.org

Language: English - Date: 2005-12-27 20:37:48
210Science / Biology / Protein structure / Computational chemistry / Computational phylogenetics / Protein structure prediction / Homology modeling / Structural alignment / CASP / Bioinformatics / Protein methods / Chemistry

BMC Structural Biology BioMed Central Open Access

Add to Reading List

Source URL: www.ram.org

Language: English - Date: 2008-07-19 00:25:16
UPDATE